scspecies.models.scspecies
==========================

.. currentmodule:: scspecies.models

.. autoclass:: scSpecies

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~scspecies.__init__
      ~scspecies.average_slices
      ~scspecies.compute_logfold_change
      ~scspecies.create_directory
      ~scspecies.encode
      ~scspecies.eval_prototypes
      ~scspecies.filter_outliers
      ~scspecies.get_batch
      ~scspecies.get_representation
      ~scspecies.hmu
      ~scspecies.initialize
      ~scspecies.initialize_prototypes
      ~scspecies.label_transfer
      ~scspecies.load
      ~scspecies.most_frequent
      ~scspecies.opt
      ~scspecies.pkl
      ~scspecies.pth
      ~scspecies.ret_pred_df
      ~scspecies.return_similarity_df_prot
      ~scspecies.save
      ~scspecies.save_mdata
      ~scspecies.similarity_metric
      ~scspecies.similarity_metric_on_latent_space
      ~scspecies.train_context
      ~scspecies.train_target
      ~scspecies.transfer_info
      ~scspecies.update_param